So is the question keep the ballast resistor or bypass it?
like Ron stated that would depend on the coil specs and also the EI specs
which EI is it pertronix, Mallory (doubtful) or prestolite
depending on the wiring some EI are connected to the coil ( like the points setup)
with ballast resistor still in place - however lower voltage present to EI and coil
when running (not start as Ron already explained)
and some EI are wired to +12 tapped off the purple wire somewhere
and ballast resistor still in the circuit - this would feed constant +12 to the EI
and reduced voltage to the coil
and yet others are either way as mention with ballast resistor bypassed
regardless EI or points keep the OFF when not running
or on aux if you just want the stereo on no need to apply voltage to a coil and or EI
on a non running engine
good luck
Dan T